FastQCFastQC Report
Fri 3 May 2024
EGAF00003948467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513058175
Total Bases77.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT55064201.0732545095885082No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA47863810.9329119451220127No Hit
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC9057930.17654781545971857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)