FastQCFastQC Report
Tue 7 May 2024
EGAF00003948468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438729432
Total Bases66.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT33555650.7648369941134927No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA26008820.5928214088905711No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7976740.1818145631041229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)