FastQCFastQC Report
Thu 2 May 2024
EGAF00003948469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438729432
Total Bases66.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28945470.6597567404595732No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA26903660.6132175787103338No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6412020.14614975728366453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)