FastQCFastQC Report
Mon 6 May 2024
EGAF00003948470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464913362
Total Bases70.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACTGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31858520.6852571382966619No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG20527490.4415336636420444TruSeq Adapter, Index 19 (97% over 37bp)
AGCGACTGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18558530.39918254704841116No Hit
AGCGACTGTATGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9088550.19548911136694755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)