FastQCFastQC Report
Sat 4 May 2024
EGAF00003948471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464913362
Total Bases70.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACTGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27590050.5934449782495175No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC22933440.4932841659216497Illumina Single End Sequencing Primer (100% over 31bp)
AGCGACTGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19151080.411927932499389No Hit
AGCGACTGTATGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7689660.16539984927342227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)