FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003948771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28445325
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACCAAGCAATCTCGTAT7342682.581331027154726TruSeq Adapter, Index 6 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCAAGCAATCTCGTATG2346120.8247822796891933TruSeq Adapter, Index 6 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)