FastQCFastQC Report
Sat 1 Apr 2023
EGAF00003948785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003948785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35209799
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGACTGGAATCTCGTATG568980.1615970599548154TruSeq Adapter, Index 23 (97% over 38bp)
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCC419090.11902652440589052No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC362660.10299973595418706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)