FastQCFastQC Report
Sat 1 Apr 2023
EGAF00003952318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003952318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26864220
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC1794480.6679814265964171TruSeq Adapter, Index 2 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCGCGTATGC683000.2542415152943209TruSeq Adapter, Index 2 (98% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN568160.21149320546064615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)