EGAF00003952707 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00003952707
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19575754
Sequences flagged as poor quality	0
Sequence length	101
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC	51948	0.26536908872066944	Illumina Single End PCR Primer 1 (96% over 31bp)
CGCAGGGCCGGCGGACCCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGG	34689	0.1772039023375549	No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA	32931	0.16822340534111738	No Hit
CTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACC	30826	0.15747030740169704	No Hit
CTTAGAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGCCGACTTCC	29108	0.1486941448079088	No Hit
CGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACT	26465	0.13519274915285512	No Hit
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG	25714	0.13135637074311418	No Hit
CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC	23923	0.12220729786449096	No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA	22957	0.11727262204050991	No Hit
CCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTA	22343	0.11413608895984287	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	7380	39.777184	60-61
ATCGGGA	2540	37.614956	1
CGCCGTA	6930	37.116608	56-57
TGGCGCG	6265	33.96574	2
GTGGTCG	9135	33.796803	52-53
GGTCGCC	9240	32.744495	54-55
TCGCCGT	8425	32.447292	56-57
TGGTCGC	8390	32.297176	52-53
ACGTGTA	10950	32.03363	38-39
GTAGATC	11085	31.94385	42-43
TCTCGGT	9670	31.854187	46-47
CAGTACG	10850	31.497519	34-35
GTACGTG	11095	31.251179	36-37
TCGGTGG	10675	30.412607	48-49
AGTACGT	10535	30.27518	34-35
GATCTCG	10810	30.142653	44-45
TACGTGT	10570	30.107222	36-37
TGCGACA	7750	29.111603	6
GCGACAT	8000	28.379475	7
GTGTAGA	12775	28.349606	40-41