FastQCFastQC Report
Fri 10 May 2024
EGAF00004039784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004039784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5353266
Total Bases406.8 Mbp
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG294330.5498138893154197No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG199540.37274441434443945No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG190660.35615640993741016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)