FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004040696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004040696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3621677
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTAT45140.12463839265621976TruSeq Adapter, Index 11 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)