FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004043847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004043847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1965215
Sequences flagged as poor quality0
Sequence length35-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN139930.7120340522538247No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGCTTAATCTCGTAT117020.5954564767722615TruSeq Adapter, Index 25 (97% over 39bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26210.1333696313126045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)