FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004043997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004043997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3013371
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCGTAGGATCTCGTAT327681.0874200355681394TruSeq Adapter, Index 6 (97% over 36bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN50810.1686151489478063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46470.15421267411148512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)