FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004044315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004044315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2320058
Sequences flagged as poor quality0
Sequence length35-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT744763.2100921614890665TruSeq Adapter, Index 19 (97% over 38bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN181520.782394233247617No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38750.16702168652680235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)