FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004044911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004044911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2428004
Sequences flagged as poor quality0
Sequence length35-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAATCAGATCTCGTAT193040.7950563508132606TruSeq Adapter, Index 3 (97% over 36bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN47930.1974049466145855No Hit
GTCAGAGTGTAAGGAAATGAGAGGCCAGAAGGAGAGAGAAAGGAATGAGG27550.11346768786212873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)