FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004045002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2231275
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN315181.412555601617909No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG270721.2132973300019048No Hit
GCCAGAAGGAGAGAGAAAGGAATGAGGGAAGAGAGAAGTGGGGAAGAAGG52260.23421586312758402No Hit
GGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTCT42060.18850208961244133No Hit
GGGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTC41290.1850511478862982No Hit
GTCAGAGTGTAAGGAAATGAGAGGCCAGAAGGAGAGAGAAAGGAATGAGG23150.10375233890936797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)