FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004045071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2840753
Sequences flagged as poor quality0
Sequence length35-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT309661.0900630924265502TruSeq Adapter, Index 2 (97% over 37bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN228360.8038713679084384No Hit
GGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTCT33430.11768006581353606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)