FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004045073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3612675
Sequences flagged as poor quality0
Sequence length35-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTAGCTCATCGGGGGT72360.2002947954078349TruSeq Adapter, Index 22 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTAGCTCATCGGGGTT63450.17563163030164627TruSeq Adapter, Index 22 (97% over 37bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40510.11213297625720553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)