FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004045108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2179039
Sequences flagged as poor quality0
Sequence length35-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN269111.234993958345858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG233301.0706554586677888No Hit
GCCAGAAGGAGAGAGAAAGGAATGAGGGAAGAGAGAAGTGGGGAAGAAGG48930.22454852804378445No Hit
GGGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTC40290.18489802155904508No Hit
GGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTCT40020.18365894323139695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)