FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004045113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1950587
Sequences flagged as poor quality0
Sequence length35-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN126930.650727191353167No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGCTTAATCTCGTAT118830.6092012301937827TruSeq Adapter, Index 25 (97% over 39bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22990.11786195642645009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)