FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004045601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2458759
Sequences flagged as poor quality0
Sequence length35-101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAATCAGATCTCGTAT192380.7824272325998604TruSeq Adapter, Index 3 (97% over 36bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN32790.13335995923146596No Hit
GTCAGAGTGTAAGGAAATGAGAGGCCAGAAGGAGAGAGAAAGGAATGAGG28640.11648152584291507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)