FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004045661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12476540
Sequences flagged as poor quality0
Sequence length35-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCGGGGTT212350.17019943029076973TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCGGGGGT156300.1252751163383438TruSeq Adapter, Index 8 (97% over 36bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG144840.11608987748205832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)