FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004045685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2193860
Sequences flagged as poor quality0
Sequence length35-101
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATAATCATCTCGTAT291101.3268850336849207TruSeq Adapter, Index 7 (97% over 35bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN209910.9568067242212356No Hit
GGGAGGTTCCTGTGTGGATGGGGAAAATGGCTTCCGCTGCCTCTGCCCGC30210.13770249696881295No Hit
GGGCTACCACCCACCCTCTCAGTCTTGTGAAGAGTCTGGGACCTCCTTCT27800.12671729280810992No Hit
GCCAGAAGGAGAGAGAAAGGAATGAGGGAAGAGAGAAGTGGGGAAGAAGG23160.10556735616675632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)