FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004045801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2994784
Sequences flagged as poor quality0
Sequence length35-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT122670.40961217904196096TruSeq Adapter, Index 19 (97% over 38bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31970.10675227328581963No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN30100.10050808338765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)