FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004045875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11208207
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTAT3265712.913677450817959TruSeq Adapter, Index 7 (97% over 36bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1743991.5559937463681748No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN112150.1000606073745783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)