FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004045953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004045953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11772072
Sequences flagged as poor quality0
Sequence length35-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG275940.23440223607195063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG274300.233009108337088No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCGAGGATCTCGTAT233600.19843575540482594TruSeq Adapter, Index 9 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCGAGGATCGGGGTT199100.1691291048848495TruSeq Adapter, Index 9 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCGAGGATCGGGGAT143360.12177975126213975TruSeq Adapter, Index 9 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCGAGGATCGCGTAT137610.11689530950881036TruSeq Adapter, Index 9 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)