FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004046530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1070080
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCT36270.3389466208133971No Hit
CCACTGCACTCCAGCCTGGGTAACAGAATGAGACCCTGTCTCAAAAGAAAAAAATAAAAAGACCACCAGGGCCCA33910.31689219497607657No Hit
GCAACAGAGCCCGATAGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCG24230.22643166866028708No Hit
GAAGCTAAAGTGTGTAGAAATTAACTTGACAGTAATCAAAGAGGTAGCCACCCTGCTTGGTTTGAATCACAGCTC18940.1769961124401914No Hit
CAAAATATTCCAGACAATTTTGGAAATGTATATCCAGAAATGACGCTCGTTCTACATTTAGCCTGGGTTGCCTGT15510.1449424342105263No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCG15370.14363412081339713No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG12360.11550538277511962No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)