FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004046534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1737372
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCG49110.28266830592411984No Hit
GGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAA45460.2616595639851454No Hit
CCACAATCCAGGGCTCAGAAAACCTGAGCAGGGTCCATCCCTGCCTCAGCCGCCTCCTGCCAGGGATCTCCGGTC33860.19489205535717163No Hit
ATCTAGAAATGGAACCACTGCTCTTTTGACAGGTGCCATCTCAGTGGCATCACTGGAAAGTCCAGATTGCCTGAC33270.19149612172867989No Hit
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG22160.12754896475826707No Hit
TACCATTGCTGCTGGGACAGCTGCAATTGGTTATCTAGCTTACAAAAGATTTTATGTTAAAGATCATCGAAATAA20120.11580709255127859No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)