FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004046623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1820678
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCAATCCGAATGGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCAATCCGAGTGCAATCGAATG62260.3419605223987987No Hit
ACTCCAGAGAGAGGCCTGGGTTAAGGATAAAGTTGTAGAAACCATACAGCATGGGAATGCATGAGACCTTAGAGG52500.2883541186305321No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG44430.2440299712524675No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCC26280.14434183309734067No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT26240.14412213472124122No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCT25350.13923384585302837No Hit
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG24810.13626791777568575No Hit
GAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAA20530.11276019153304427No Hit
GGTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATA19220.1055650697157872No Hit
GCAACAGAGCCCGATAGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCG18840.10347793514284238No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)