FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004046643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1309415
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACAGTTGTCCTCAATTGCGTAGGACCATATCGGTTTTATGGAGAACCTGTAATAAAAGCATGTATTGAAAATG170671.3034064830477734No Hit
AGACGGGGTTTTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGT39900.30471622823932826No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCG29370.22429863717767096No Hit
TGCAGGAGCTGTTTAGTTTGGGCTAATGACTAAGGGCATGGTTGTCAGGTAACCTTTGGTTCAAGTCCCAGATCT24180.18466261651195381No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG19410.1482341350908612No Hit
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG17060.1302871893173669No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)