FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004046649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1868218
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG47560.2545741449873623No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCG32780.17546132196563785No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT28790.1541040713664037No Hit
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG28010.1499289697455008No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCT27280.14602150284388654No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCC26770.1432916287071423No Hit
GAAATTAGCCGGGCACGGTGGTGCATGCCTGTGGTCCCAGCTACTAGGGAGGCTGAGGTGGGAGGATCACTTGAG21270.113851809585391No Hit
GGAATGTGCTAGACACCACAGATACGTAATGATGGACAATAAATGACATGATGTGGAGAGTTCACCCACACATGC20080.10748210326632117No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA19980.10694683382774386No Hit
GGTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATA19550.1046451752418615No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCA18860.10095181611567816No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)