FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004046655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1548080
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCG43780.2828019223812723No Hit
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG29760.192238127228567No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG28370.18325926308717896No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT24640.159164901038706No Hit
GGTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATA19340.12492894424060773No Hit
GAGAGGCTGAGGTGGGAGGATCACTTGAGCCTGAAGGTCGAAGCTGCAGTAAGTCATGACTGTACTGGTGACTCA18730.12098857940158131No Hit
ATTGGTGGCTGCTTTTAGGCCTACTATGGGTGTTAAATTTTTTACTCTCTCTACAAGGTTTTTTCCTAGTGTCCA18160.1173065991421632No Hit
GCAACTCATCCTTTGCACCTCAGACGTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTGCATCT16940.10942586946411038No Hit
ATACAGCTCCCCTTACCGTGCTGTCAAATAAGTTAGACCGCTACCCATACTTAATTCATTCTAGAAGTCCACAAC16730.10806935042116687No Hit
ATGCGATCTTTCCATCTCCCAGCCTCCCAAGTATCTGGAACTACAGGCACATGCCACCATGCCTGGCTAATTTTT15900.10270787039429487No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)