FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004046696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699152
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTGTTCAGGCACTCCGATTCCAAGCCACAAGGGTTTTCATCAGCTGGCTTGCAGTTACAGCGGGGAATCTCT24570.3514257271666247No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG20560.2940705311577454No Hit
TCTGGGGTGCTGGGTAAATGGAGAACTCCAGCTTGGACTTCTTGCCATAATCAACTGAGAGACGTTCCATGAGCA13320.1905165114309907No Hit
CTTAGTGGAACATTCAGTGCACATGACTGGGTGACAGATTTCTTCCACATCTGTCTCTGCCTTCTCGGCAGCATC9480.13559283245989429No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCC9430.13487768038995812No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT9180.13130192004027738No Hit
GAGTACATGGGGGGAACTAATGCTTTCTTCTTCTTCTTTAAAAAAGGTAACATTGGCTGGGTATGGTTGCTCATG7730.11056251001212898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)