FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004046700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004046700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41339
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCA1450.3507583637727086No Hit
GTACATGGGAAGGAGGCGGCCGCTGGCCCAGGAGAGAACACGGGGAGGTTTGTTTGTGTGAAAGGAAAGTAGTCC1090.26367352862913956No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG1060.25641645903384214No Hit
CACCGAGTACTGCTCGGTGAACACCATGTCGAACGGCAGCTCCGCGAACTGACTGATGAACGCCAGGTTCTTGGA880.21287404146205763No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA860.20803599506519269No Hit
CATTTGTTCAGGTCTTCCAGCTCCTTGGCCAGGTGATCTTCATTTTCAGTGTTGACTCCAAAGCGTGAGATGCTT780.1886838094777329No Hit
CGCCCAGGCTGGAGTGCACTGGCACGATCTCGGCTTATTGCAAGCTACGCCTCCTGGGTTCATACCATTCTCCTG740.179007716684003No Hit
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACA660.1596555310965432No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCC550.133046275913786No Hit
CAAGGCCTGCTGATCGTCTCGGGCGGCAACGAGCCGCGCATGGGCGCGCATCGCGGGCAGGCCATTCTGGCGGCC530.12820822951692107No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT510.12337018312005613No Hit
GAGTACATGGGTCCCTGCGAGGGCGCGACGCTGATCGGTACGCTGGACGAGGCGCCGTCAGATACAGGCCTGCTG490.11853213672319118No Hit
GGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAA480.1161131135247587No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT460.11127506712789376No Hit
CAACCTGGCTTACCTGGAGGCCATTCACAACTTCGTGGAGGTCTTAAACGAATATTTCCACAATGTCTGTGAACT430.10401799753259634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)