FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1975138
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTC60780.3077253336222583TruSeq Adapter, Index 1 (95% over 22bp)
GTATCAACGCAGAGTACATGGGCGCGGATCCACCATGGGCAAACCGATTCCGAACCCGCTGCTGGGCCTGGATAG25800.13062378426216295No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)