FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004048124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36083
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5671.571377102790788No Hit
CGTCAGATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCG5541.5353490563423218No Hit
CTGCCACCTCCACCTGCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGTGATTACAGGTGCGCA1730.4794501565834326No Hit
GTCCCGCCCCTTCGCGTCCCGGGAACCGGCTGGCTTCCGAGCCGCACTCGCCGATCCTCCAGGCATGCCCCGCTA1310.3630518526730039No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCA1220.33810935897791206No Hit
GGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACAT1100.3048527007177895No Hit
CGTCAGATGTGTATAAGAGACAGGCAATCGCAGGCACTGACGACTCTCACCTGTCTCTTATACACATCTCCGAGC1060.2937671479644154No Hit
GCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGC910.25219632513926227No Hit
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACA860.23833938419754458No Hit
AATGTGCAGGATAAGGGAAATGGTGCAAGGCTGAAGAGAAATTCCTTAACTGCATCCTAAGCAGCTGTTGTCAGT820.22725383144417038No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA720.19953994956073495No Hit
GATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTA620.17182606767729955No Hit
GCAGCGTCAGATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA500.13856940941717708No Hit
GAGATGGAGTGTCTCTCTTGTTGCCCAGGCCAGAGTGCAATGGCGCGAGCTTGGCTCACCACAACCTCCGCCTCC500.13856940941717708No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG460.1274838566638029No Hit
GCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGT440.12194108028711582No Hit
CGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCT440.12194108028711582No Hit
GAATAAATGTGACAAAAGCAAAAACTGGTGTGAAAAAGTACAAATAACTATCTGGATTTAAAAATGTGTCTACGA430.11916969209877229No Hit
ACTTTCCCCTGTCCTGTGCCACCTGCAGAGGGCAAACAGCAGGAGCAGGGTGAGGTGGGCAGTCAACAGGGCCAG420.11639830391042873No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT420.11639830391042873No Hit
GTCAGATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGT410.11362691572208519No Hit
CGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGG390.10808413934539811No Hit
TCTCTGGAGACAGCTCTCTTTGGTTCCACAACTCTTCCATCCACCTTGTGTGGCCTTGCATTCATAGCTGCATCC380.10531275115705457No Hit
GGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAA380.10531275115705457No Hit
CTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGAT380.10531275115705457No Hit
GGCAGCGTCAGATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAG370.10254136296871104No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)