FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004048127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78029
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAGATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAG8521.0919017288444042No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8001.0252598392905201No Hit
CTGCAGGGCCGCGGCCTGGTCTTCTGTGCTTCACCATCTACATAATGAATCCCAGTATGAAGCAGAAACAAGAAG2450.31398582578272183No Hit
GCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTA1860.23837291263504595No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCA1800.23068346384036703No Hit
AGGCCAGCCTGACCAATGTGGAGAAACCCCATCTGTACTAAAAATACAAAATTAGCTGGGCTTGATGGCGCATGC1540.19736251906342517No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA1460.18710992067051993No Hit
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACA1330.17044944828204897No Hit
CGTCAGATGTGTATAAGAGACAGGCAATCGCAGGCACTGACGACTCTCACCTGTCTCTTATACACATCTCCGAGC1310.16788629868382268No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGC1160.14866267669712543No Hit
TTGCTACAGTCTGTGGCAGTTTCAGAAGAGGTGCAGAGTCCAGTGGTGACATGGATGTTCTCCTGACCCATCCCA1050.13456535390688076No Hit
GATGTGTATAAGAGACAGGCGAAGGCTTCCTCTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGCGCTC1050.13456535390688076No Hit
GGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACAT880.11277858232195723No Hit
TGGCCAGCCTGACCAATGTGGAGAAACCCCATCTGTACTAAAAATACAAAATTAGCTGGGCTTGATGGCGCATGC850.10893385792461778No Hit
GGCCTCAGTGAAGATGTGAGCATCAGCAAATTCTTCGATGATCCTATGTTGCTGGAACTTGCCAAACAGGATGTT790.10124440912993887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)