FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004048437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences629128
Sequences flagged as poor quality0
Sequence length75
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGAAGATAGCTCTGGCCACATGATAGAGAAGCAGTAGGAGGCTGTCACGATAATCCAGGTGAAAGCTGATGAC39730.6315090092954058No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCC15650.24875700970231812No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTT11600.18438219249500898RNA PCR Primer, Index 39 (96% over 29bp)
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG7990.12700118258923462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)