FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004048456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396974
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGC72791.8336213454785453No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC24850.6259855809196572No Hit
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGT15410.3881866318700973No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT9240.2327608357222387No Hit
GTTCACTACCTGGGTGACAGGATCAGTGGAAGCCCAAACAGTAGCAGCAA7780.19598260843279408No Hit
CGTCAGATGTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACAT7240.18237970244902688No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCC6740.16978441913072392No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6490.16348677747157245No Hit
GCCCCGCGACGATCGCCAGCGACACCGCCAGCAGCGCGCCGCGCGGCAGC6310.15895247547698338No Hit
GTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCC6110.1539143621496622No Hit
GTGTCGTGGTGGTCGTCTGGCAGTTGGTGCACTGAGTACCTGCCCGTTTA6030.15189911681873372No Hit
TCCAAGGAGTGCCTGCTCATTTCAAACAGGAGCCAATGGTGCATCCAGCT5780.14560147515958222No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5580.14056336183226104No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTC5400.136029059837672No Hit
GATTCCATTCCATTCCTTTCCATTCCAATACGGATGATTCCATTCCATTG5110.12872379551305627No Hit
GTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGC4980.12544902185029752No Hit
GTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCTCTTATACACA4270.10756371953830729No Hit
CGTCAGATGTGTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCT4220.10630419120647701No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC4040.10176988921188793No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)