FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004048457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences603886
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACACTGAG45160.7478232646559119No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC44240.7325886011598216No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT19560.3239021934603551No Hit
GCTCAGATTAGCTTTAAGCAGGAACCCTTGGACTTTCGGCGACAGGGTCT17020.28184127467767095No Hit
CCTCTGGGAGGGCTGCAGAGTAAGTGCCGCCTCTGCGCTCCGACGGAGGC13110.21709395481928706No Hit
GAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTA13070.21643157814554403No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG11260.18645903365867067No Hit
GCAAGAATACAATATAGTAATTAAAAAATAAACACAACCTCTGGTTTGAT11160.18480309197431302No Hit
AAGTTTGCTGAGGAGCAGCTGCTAAAGCATGGATGGACTCAAGGCAAAGG10900.18049764359498316No Hit
GGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGA10700.17718576022626786No Hit
GAGTACATGGGATACCACGGCACGGCCGGTATGAACCGTCAATTCCTTGC10390.1720523410047592No Hit
CTTATACACATCTCCGAGCCCACGAGACACTGAGCGATCTCGTATGCCGT9200.15234663496090323No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9050.14986272243436677No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8300.13744315980168442No Hit
CTATTACTGCTAGCATGTCTTTAGCATCATTTTGCCCTCCCTCTGACTTT7040.11657829457877812No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACACTGAG6310.10448992028296732No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)