FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004048458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences909696
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC47550.5227020894892359No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGC41980.4614728436752497No Hit
ATGGAAAGGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCAA37770.41519364710848455No Hit
ATGGAAAGGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCGA28450.31274183903194036No Hit
GTGATTGGCTTAGTGGGCGAAATATTATGCTTTGTTGTTTGGATATATGG20770.22831803151822147No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGG18610.20457383565498805No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA11610.12762505276487968No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC11160.12267834529337274No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTCGTATGCCGT11020.12113936963557057No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT10240.11256507668495849No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC9820.10794814971155199No Hit
ATGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGA9230.10146246658224287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)