FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1233759
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC130311.056203034790425No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24480.19841800546135835No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17500.14184293691069327No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)