FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1747803
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT70110.40113216420843767No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC52840.30232240132326127No Hit
GTATCAACGCAGAGTACATGGGCAATGTATCTTATCATGTCTGGATCAAA23450.13416843889156846No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCC22590.1292479758874427No Hit
ATCTTATCATGTCTGGATCGAAGCTTTTAGGCGCGCCCTAGGAGGGATCC21240.12152399326468716No Hit
CCCTAGGAGGGATCCGCACGAGTCTTTGATCCAGACATGATAAGATACAT21170.12112349046202575No Hit
GTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCTCTTATACACA20500.11729010649369524No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA18930.108307400776861No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)