FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1300537
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC56510.43451282047338907No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT46950.361004723433474No Hit
GTATCAACGCAGAGTACATGGGCACTCTAGAGACTGTCAGGGAACGGTGC14050.10803229742790864No Hit
GTATCAACGCAGAGTACATGGGCAATGTATCTTATCATGTCTGGATCAAA13810.10618690587042123No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCA13550.10418773168314319No Hit
CTCTAGAGACTGTCAGGGAATCAATGCACCGTTCCCTGACAGTCTCTAGA13400.10303436195971358No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)