FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004048715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences739573
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACG71310.9642050210053639No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC42880.5797940162769598No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGT34040.4602655856825492No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCC12390.1675291012516682No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC9710.1312919752343582No Hit
GTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCTCTTATACACA8680.11736502008591444No Hit
GTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCC8490.11479597010707529No Hit
GTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGC8090.109387443835835No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACG7440.10059858864506953No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)