FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1152226
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGC168871.4655978948574324No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC64360.5585709747914037No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTCGTATGCCGT38340.3327472214652334No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGC19820.17201486513930428No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC17060.1480612310432155No Hit
CGTCAGATGTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACAT16960.1471933457498789No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTCGTATGCC15560.1350429516431672No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTC15370.13339396958582778No Hit
GTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCC15190.13183177605782198No Hit
GTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGC14350.12454153959379496No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA13520.11733809165910161No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGC12790.11100252901774478No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12190.10579521725772548No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)