FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1475657
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACG235641.5968480480219995No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC123260.8352889594262081No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCG29120.19733583075199723No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA26370.1787000637682063No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTC20410.13831127423242665No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACG19700.1334998580293388No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA18270.12380925919776752No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGT16130.10930724416310837No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG16060.10883287918533914No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA14950.10131080596642715No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)