FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1529067
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG1045886.839988044997375No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC510373.337787029606943No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT119880.7840075026143393No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA81110.530454192000743No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC80460.5262032337366512No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG74000.48395524852736993No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG73500.48068528063191474No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC45450.29724008169687793No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT39200.25636548300368783No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGT38380.25100273565514136No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC35240.23046733727168267No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGA34580.22615097964968178No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTA30520.19959884033858558No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC26090.17062692478485245No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA25730.16827254790012472No Hit
GTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCC24420.15970523201403208No Hit
TCCTCAATGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGA23300.15238050392821242No Hit
CGTCAGATGTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACAT22730.1486527405273935No Hit
GTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCTCTTATACACA21560.14100101565202833No Hit
GTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACATCTCCGAGC20120.13158350811311734No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCC18810.12301619222702471No Hit
CGTCAGATGTGTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCT17180.11235609688784076No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA16930.11072111294011316No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC15340.1003226150325656No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)