FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1124770
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGC256942.2843781395307485No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC160531.4272251215804121No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGG27610.2454724076922393No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA26290.2337366750535665No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTC21140.1879495363496537No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA19750.17559145425286948No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG18200.1618108591089734No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGC16850.1498084052739671No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA16200.14402944602007522No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC13410.11922437476106226No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13320.11842421117206185No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTCGTATGCCGT13230.11762404758306143No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTC12420.11042257528205766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)