FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1624345
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG420812.5906442289045737No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC199431.2277564187410925No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT42730.26305987952066834No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA32500.2000806478919195No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC30760.18936863782016752No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA27200.16745211146646802No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG26770.16480489058666725No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG26480.16301955557470857No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21360.13149915812219692No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC18650.11481551025182457No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA18480.11376893455515916No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC16950.10434975328517034No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)